diff --git a/LUFA/ManPages/ChangeLog.txt b/LUFA/ManPages/ChangeLog.txt
index 1297202afc240f63d3842ae1b4cc3781742e534a..b399a75d668b7b28c10ef53efecfe33f2d0f83db 100644
--- a/LUFA/ManPages/ChangeLog.txt
+++ b/LUFA/ManPages/ChangeLog.txt
@@ -102,6 +102,7 @@
   *  - Fixed USBtoSerial and XPLAINBridge demos discarding data from the PC if the send buffer becomes full
   *  - Fixed broken input in the MagStripe reader project due to an incorrect HID report descriptor
   *  - Fixed incorrect PollingIntervalMS values in the demo/project/bootloader endpoint descriptors (thanks to MCS Electronics)
+  *  - Fixed AVRISP-MKII clone project not starting the target's program automatically after exiting TPI programming mode
   *
   *  \section Sec_ChangeLog100807 Version 100807
   *  <b>New:</b>
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.c b/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.c
index 26d6bf16f7d45e17789fb934db74ca779587feea..551d4029c88b8077888b07733ef3f637f185b02d 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.c
+++ b/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.c
@@ -119,6 +119,40 @@ bool TINYNVM_WaitWhileNVMControllerBusy(void)
 	}
 }
 
+/** Enables the physical TPI interface on the target and enables access to the internal NVM controller.
+ *
+ *  \return Boolean true if the TPI interface was enabled successfully, false otherwise
+ */
+bool TINYNVM_EnableTPI(void)
+{
+	/* Enable TPI programming mode with the attached target */
+	XPROGTarget_EnableTargetTPI();
+
+	/* Lower direction change guard time to 0 USART bits */
+	XPROGTarget_SendByte(TPI_CMD_SSTCS | TPI_CTRL_REG);
+	XPROGTarget_SendByte(0x07);
+
+	/* Enable access to the XPROG NVM bus by sending the documented NVM access key to the device */
+	XPROGTarget_SendByte(TPI_CMD_SKEY);
+	for (uint8_t i = sizeof(TPI_NVMENABLE_KEY); i > 0; i--)
+	  XPROGTarget_SendByte(TPI_NVMENABLE_KEY[i - 1]);
+
+	/* Wait until the NVM bus becomes active */
+	return TINYNVM_WaitWhileNVMBusBusy();
+}
+
+/** Removes access to the target's NVM controller and physically disables the target's physical TPI interface. */
+void TINYNVM_DisableTPI(void)
+{
+	TINYNVM_WaitWhileNVMBusBusy();
+
+	/* Clear the NVMEN bit in the TPI STATUS register to disable TPI mode */
+	XPROGTarget_SendByte(TPI_CMD_SSTCS | TPI_STATUS_REG);
+	XPROGTarget_SendByte(0x00);
+
+	XPROGTarget_DisableTargetTPI();
+}
+
 /** Reads memory from the target's memory spaces.
  *
  *  \param[in]  ReadAddress  Start address to read from within the target's address space
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.h b/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.h
index 905f6fc7d8dcdb899ff6255993c45ac2ed32431b..27a3dba832bc91635b8eaeb7cec28b60b466a532 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.h
+++ b/Projects/AVRISP-MKII/Lib/XPROG/TINYNVM.h
@@ -64,6 +64,8 @@
 	/* Function Prototypes: */
 		bool TINYNVM_WaitWhileNVMBusBusy(void);
 		bool TINYNVM_WaitWhileNVMControllerBusy(void);
+		bool TINYNVM_EnableTPI(void);
+		void TINYNVM_DisableTPI(void);
 		bool TINYNVM_ReadMemory(const uint16_t ReadAddress,
 		                        uint8_t* ReadBuffer,
 		                        uint16_t ReadLength);
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.c b/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.c
index 60e755265cfc47a65411602a117bf69db3451e15..378e691ad0c1c453084e107f11928e9fd7a892cf 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.c
+++ b/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.c
@@ -105,6 +105,7 @@ bool XMEGANVM_WaitWhileNVMControllerBusy(void)
 	{
 		/* Fetch the current status value via the pointer register (without auto-increment afterwards) */
 		XPROGTarget_SendByte(PDI_CMD_LD | (PDI_POINTER_INDIRECT << 2) | PDI_DATSIZE_1BYTE);
+
 		uint8_t StatusRegister = XPROGTarget_ReceiveByte();
 
 		/* We might have timed out waiting for the status register read response, check here */
@@ -117,6 +118,48 @@ bool XMEGANVM_WaitWhileNVMControllerBusy(void)
 	}
 }
 
+/** Enables the physical PDI interface on the target and enables access to the internal NVM controller.
+ *
+ *  \return Boolean true if the PDI interface was enabled successfully, false otherwise
+ */
+bool XMEGANVM_EnablePDI(void)
+{
+	/* Enable PDI programming mode with the attached target */
+	XPROGTarget_EnableTargetPDI();
+
+	/* Store the RESET key into the RESET PDI register to keep the XMEGA in reset */
+	XPROGTarget_SendByte(PDI_CMD_STCS | PDI_RESET_REG);
+	XPROGTarget_SendByte(PDI_RESET_KEY);
+
+	/* Lower direction change guard time to 0 USART bits */
+	XPROGTarget_SendByte(PDI_CMD_STCS | PDI_CTRL_REG);
+	XPROGTarget_SendByte(0x07);
+
+	/* Enable access to the XPROG NVM bus by sending the documented NVM access key to the device */
+	XPROGTarget_SendByte(PDI_CMD_KEY);
+	for (uint8_t i = sizeof(PDI_NVMENABLE_KEY); i > 0; i--)
+	  XPROGTarget_SendByte(PDI_NVMENABLE_KEY[i - 1]);
+
+	/* Wait until the NVM bus becomes active */
+	return XMEGANVM_WaitWhileNVMBusBusy();
+}
+
+/** Removes access to the target's NVM controller and physically disables the target's physical PDI interface. */
+void XMEGANVM_DisablePDI(void)
+{
+	XMEGANVM_WaitWhileNVMBusBusy();
+
+	/* Clear the RESET key in the RESET PDI register to allow the XMEGA to run */
+	XPROGTarget_SendByte(PDI_CMD_STCS | PDI_RESET_REG);
+	XPROGTarget_SendByte(0x00);
+
+	/* Do it twice to make sure it takes effect (silicon bug?) */
+	XPROGTarget_SendByte(PDI_CMD_STCS | PDI_RESET_REG);
+	XPROGTarget_SendByte(0x00);
+
+	XPROGTarget_DisableTargetPDI();
+}
+
 /** Retrieves the CRC value of the given memory space.
  *
  *  \param[in]  CRCCommand  NVM CRC command to issue to the target
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.h b/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.h
index 5f5eded1f9ee779b41f7a452bade457e3d2fd1ad..6ec8b7ebac1ab0047f5ffcec9a542d6fdc00a63f 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.h
+++ b/Projects/AVRISP-MKII/Lib/XPROG/XMEGANVM.h
@@ -108,6 +108,8 @@
 	/* Function Prototypes: */
 		bool XMEGANVM_WaitWhileNVMBusBusy(void);
 		bool XMEGANVM_WaitWhileNVMControllerBusy(void);
+		bool XMEGANVM_EnablePDI(void);
+		void XMEGANVM_DisablePDI(void);
 		bool XMEGANVM_GetMemoryCRC(const uint8_t CRCCommand, uint32_t* const CRCDest);
 		bool XMEGANVM_ReadMemory(const uint32_t ReadAddress, uint8_t* ReadBuffer, uint16_t ReadSize);
 		bool XMEGANVM_WriteByteMemory(const uint8_t WriteCommand, const uint32_t WriteAddress, const uint8_t Byte);
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.c b/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.c
index 276f63e0ea7a788776fb1b63828b57e166a23a1f..223a735112a549a79632e91e1058dce2c8ecb280 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.c
+++ b/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.c
@@ -118,43 +118,9 @@ static void XPROGProtocol_EnterXPROGMode(void)
 	bool NVMBusEnabled = false;
 
 	if (XPROG_SelectedProtocol == XPRG_PROTOCOL_PDI)
-	{
-		/* Enable PDI programming mode with the attached target */
-		XPROGTarget_EnableTargetPDI();
-
-		/* Store the RESET key into the RESET PDI register to keep the XMEGA in reset */
-		XPROGTarget_SendByte(PDI_CMD_STCS | PDI_RESET_REG);
-		XPROGTarget_SendByte(PDI_RESET_KEY);
-
-		/* Lower direction change guard time to 0 USART bits */
-		XPROGTarget_SendByte(PDI_CMD_STCS | PDI_CTRL_REG);
-		XPROGTarget_SendByte(0x07);
-
-		/* Enable access to the XPROG NVM bus by sending the documented NVM access key to the device */
-		XPROGTarget_SendByte(PDI_CMD_KEY);
-		for (uint8_t i = sizeof(PDI_NVMENABLE_KEY); i > 0; i--)
-		  XPROGTarget_SendByte(PDI_NVMENABLE_KEY[i - 1]);
-
-		/* Wait until the NVM bus becomes active */
-		NVMBusEnabled = XMEGANVM_WaitWhileNVMBusBusy();
-	}
+	  NVMBusEnabled = XMEGANVM_EnablePDI();
 	else if (XPROG_SelectedProtocol == XPRG_PROTOCOL_TPI)
-	{
-		/* Enable TPI programming mode with the attached target */
-		XPROGTarget_EnableTargetTPI();
-
-		/* Lower direction change guard time to 0 USART bits */
-		XPROGTarget_SendByte(TPI_CMD_SSTCS | TPI_CTRL_REG);
-		XPROGTarget_SendByte(0x07);
-
-		/* Enable access to the XPROG NVM bus by sending the documented NVM access key to the device */
-		XPROGTarget_SendByte(TPI_CMD_SKEY);
-		for (uint8_t i = sizeof(TPI_NVMENABLE_KEY); i > 0; i--)
-		  XPROGTarget_SendByte(TPI_NVMENABLE_KEY[i - 1]);
-
-		/* Wait until the NVM bus becomes active */
-		NVMBusEnabled = TINYNVM_WaitWhileNVMBusBusy();
-	}
+	  NVMBusEnabled = TINYNVM_EnableTPI();
 
 	Endpoint_Write_Byte(CMD_XPROG);
 	Endpoint_Write_Byte(XPRG_CMD_ENTER_PROGMODE);
@@ -172,29 +138,9 @@ static void XPROGProtocol_LeaveXPROGMode(void)
 	Endpoint_SetEndpointDirection(ENDPOINT_DIR_IN);
 
 	if (XPROG_SelectedProtocol == XPRG_PROTOCOL_PDI)
-	{
-		XMEGANVM_WaitWhileNVMBusBusy();
-
-		/* Clear the RESET key in the RESET PDI register to allow the XMEGA to run */
-		XPROGTarget_SendByte(PDI_CMD_STCS | PDI_RESET_REG);
-		XPROGTarget_SendByte(0x00);
-
-		/* Do it twice to make sure it takes affect (silicon bug?) */
-		XPROGTarget_SendByte(PDI_CMD_STCS | PDI_RESET_REG);
-		XPROGTarget_SendByte(0x00);
-
-		XPROGTarget_DisableTargetPDI();
-	}
+	  XMEGANVM_DisablePDI();
 	else
-	{
-		TINYNVM_WaitWhileNVMBusBusy();
-
-		/* Clear the NVMEN bit in the TPI CONTROL register to disable TPI mode */
-		XPROGTarget_SendByte(TPI_CMD_SSTCS | TPI_CTRL_REG);
-		XPROGTarget_SendByte(0x00);
-
-		XPROGTarget_DisableTargetTPI();
-	}
+	  TINYNVM_DisableTPI();
 
 	#if defined(XCK_RESCUE_CLOCK_ENABLE) && defined(ENABLE_ISP_PROTOCOL)
 	ISPTarget_ConfigureRescueClock();
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.h b/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.h
index e5952a1ac86a2a6c5ced0dd04d5cb1220d4a506a..c0ab7d082b27ec0d185abbb8dbbfd3072169544d 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.h
+++ b/Projects/AVRISP-MKII/Lib/XPROG/XPROGProtocol.h
@@ -45,7 +45,6 @@
 		#include <LUFA/Drivers/Peripheral/SerialStream.h>
 
 		#include "../V2Protocol.h"
-		#include "XPROGTarget.h"
 		#include "XMEGANVM.h"
 		#include "TINYNVM.h"
 
diff --git a/Projects/AVRISP-MKII/Lib/XPROG/XPROGTarget.c b/Projects/AVRISP-MKII/Lib/XPROG/XPROGTarget.c
index f6fff1cf7749f4e38fb2e3219976549667af987a..9be78d0620b9ee2bb9daf4ff190c6a16b6206e7f 100644
--- a/Projects/AVRISP-MKII/Lib/XPROG/XPROGTarget.c
+++ b/Projects/AVRISP-MKII/Lib/XPROG/XPROGTarget.c
@@ -39,7 +39,7 @@
 #if defined(ENABLE_XPROG_PROTOCOL) || defined(__DOXYGEN__)
 
 /** Flag to indicate if the USART is currently in Tx or Rx mode. */
-volatile bool IsSending;
+bool IsSending;
 
 /** Enables the target's PDI interface, holding the target in reset until PDI mode is exited. */
 void XPROGTarget_EnableTargetPDI(void)
@@ -115,7 +115,7 @@ void XPROGTarget_DisableTargetTPI(void)
 	UCSR1B  = 0;
 	UCSR1C  = 0;
 
-	/* Set all USART lines as input, tristate */
+	/* Set all USART lines as inputs, tristate */
 	DDRD  &= ~((1 << 5) | (1 << 3));
 	PORTD &= ~((1 << 5) | (1 << 3) | (1 << 2));