Modify CDC and DFU bootloaders so that the various BootloaderAPI components are in unique sections and mapped explicitly - this will ensure the API and signature entries are always linked at the correct explicit address.

Add new ATPROGRAM build system module. Add ATPROGRAM and CPPCHECK modules to all application makefiles.

Clean up CORE build system module, use simple rather than recursive make variables for internal constants and $(shell) derived values.

Update project Doxygen and makefiles so that the resulting project documentation hides the unused version value, and uses the same HTML CSS stylesheet as the library core.

Add branch for the conversion of demos to use standard C header files for configuration, rather than makefile defined macros.

Alter the bootloader section sizes to all be 8KB, to be in line with the default AT90USB1287 fuses, as that is the default target MCU. Add instructions to the documentation to clarify this for the user (thanks to Georg Glock).

Fixed CDC and DFU bootloaders failing to compile when the bootloader section size is 8KB or more (thanks to Georg Glock).

Make Doxygen fail for any Doxygen output other than unsupported tags (as these are somewhat benign).

Improve exclusion list for the main library export_tar rule to exclude any compiled library files from the export.

Added additional bootloader API data to expose the bootloader start address and class to the DFU and CDC class bootloaders.

Minor bootloader tweaks; make some functions static where possible to reduce the compiled binary size, add additional comments to the makefiles.

Use the proper "-Wl,--undefined=BootloaderAPI_JumpTable" linker command line parameter in the bootloaders to ensure that the API jump tables are not discarded, rather than the previous C volatile pointer hack (thanks to Opendous Inc.).

Add new "checksource" target to the library makefiles, for automated source file existance checking.

Add new ARCH option to the makefiles to (eventually) specify the target device architecture. Update non-usb peripheral drivers to reflect future multiple architecture support.

Change bootloader makefiles to automatically compute the bootloader starting address from a flash size and bootloader section size, expressed in KB.

Altered all endpoint/pipe stream transfers so that the new BytesProcessed parameter now points to a location where the number of bytes in the transfer that have been completed can be stored (or NULL if entire transaction should be performed in one chunk).

Added new Endpoint_Null_Stream() and Pipe_Null_stream() functions.

Removed the NO_STREAM_CALLBACKS compile time option due to the new partial stream transfer feature replacing it.

Fixed errors in the incomplete Test and Measurement device demo preventing proper operation (thanks to Pavel Plotnikov).

Add ORDERED_EP_CONFIG compile time option to the CDC class bootloader, to reduce the compiled binary size, as the endpoint initialization order is fixed in the code.

Rename new CDC class bootloader NO_LOCK_BYTE_SUPPORT compile time option to NO_LOCK_BYTE_WRITE_SUPPORT as reads are still permitted.

Clean up CDC bootloader command processing code.

Added new NO_BLOCK_SUPPORT, NO_EEPROM_BYTE_SUPPORT, NO_FLASH_BYTE_SUPPORT and NO_LOCK_BYTE_SUPPORT compile time options to the CDC class bootloader.

Added new NO_SOF_EVENTS compile time option, enabled in the bootloaders to reduce the compiled binary size.

Added the --suppress-bootloader-mem option to the makefile dfu target, to ensure that writes to the bootloader section of the AVR's flash memory are ignored (thanks to Axel Rohde).

Fixed incorrect command name for EEPROM memory programming in the makefile dfu-ee target.

Makefile whitespace fixes.

Make project makefiles correctly clean intermeditary build files from assembly and C++ sources (thanks to Daniel Czigany).

Fix invocations of avr-size in all makefiles broken on unpatched *nix systems, due to the recent update to the latest WinAVR makefile template.

Fixed software application start command broken in the DFU class bootloader when dfu-programmer is used due to application start address corruption.

Re-add deleted linker options to the Bootloader makefiles, which was preventing the compiled application from being shifted into the bootloader section address space.

Add the formula used to obtain the bootloader start address to the Bootloader makefiles to help users compute the correct address for each device based on the bootloader section size.

Add new module source variables to the library core makefile, so that module sources can be added to a project's makefile on a per-module rather than per-file basis.

Disable strict aliasing explicitly in the project makefiles, as this is apparently enabled by default in newer AVR-GCC builds, and aliasing is used heavily for type-punning through the LUFA and third party library's codebase.

Removed the automated checking of event names in the demo, project and bootloader makefiles due to inconsistancies between the behaviour of the command line tools used to perform the check on each platform.

Removed the internal endpoint and pipe memory allocation macros, as this is already performed directly in the code. Simplify the endpoint and pipe reset procedure.