fixed parsing bug

js/cam/assemblers/AssemblerPost.js

@@ -125,7 +125,7 @@ define(['underscore', 'appState', 'lattice', 'cam'], function(_, appState, latti
         //offset for rotation
         var offset = self.components.substrate.centerOfRotation.clone().multiplyScalar(settings.scale);//offset in lattice pitch
         var dist = position.clone().sub(offset);
-        position = offset.add(new THREE.Vector3(-dist.y-3*settings.scale, dist.x-0.335, position.z));
+        position = offset.add(new THREE.Vector3(-dist.y, dist.x-0.335, position.z));
     } else {
         position.y -= 1;
         position.x -= settings.scale;
@@ -217,6 +217,7 @@ define(['underscore', 'appState', 'lattice', 'cam'], function(_, appState, latti
             if (!cell) return;
 
             var cellPosition = cell.getAbsolutePosition().multiplyScalar(settings.scale);
+            if (cell.getMinPosition) cellPosition = cell.getMinPosition().multiplyScalar(settings.scale);
             var cellIndex = cell.getAbsoluteIndex();
 
             if (!self.shouldPickUpStock){

js/cam/assemblers/Component.js

@@ -135,7 +135,7 @@ define(['underscore', 'cam', 'three'], function(_, cam, THREE){
     };
 
     Component.prototype.applyRotation = function(vector){//todo local rotation?
-        vector.applyQuaternion(this.getAbsoluteOrientation());
+        vector.applyQuaternion(this.getOrientation());
         return vector;
     };
 

js/cells/DMACell.js

@@ -126,7 +126,7 @@ define(['underscore', 'three', 'threeModel', 'lattice', 'appState', 'globals', '
     };
 
     DMACell.prototype.applyRotation = function(vector){//todo local rotation?
-        vector.applyQuaternion(this.getAbsoluteOrientation());
+        vector.applyQuaternion(this.getOrientation());
         return vector;
     };
 

js/cells/supercells/GIKSuperCell.js

@@ -49,6 +49,15 @@ define(['underscore', 'three', 'threeModel', 'lattice', 'appState', 'superCell',
         return unitGeos[key];
     };
 
+    GIKSuperCell.prototype.getMinPosition = function(){//for assembly
+        var position = this.getAbsolutePosition();
+        var oppPosition = this.applyAbsoluteRotation(new THREE.Vector3(3,0,0));
+        oppPosition.add(position);
+        position.x = Math.min(position.x, oppPosition.x);
+        position.y = Math.max(position.y, oppPosition.y);
+        return position;
+    };
+
     GIKSuperCell.prototype._buildWireframe = function(mesh){
         var wireframe = new THREE.BoxHelper(mesh);
         wireframe.material.color.set(0x000000);