Remove dfu-programmer program switches, to ensure maximum compatibility with all dfu-programmer versions.

Added the --suppress-bootloader-mem option to the makefile dfu target, to ensure that writes to the bootloader section of the AVR's flash memory are ignored (thanks to Axel Rohde).

Fixed incorrect command name for EEPROM memory programming in the makefile dfu-ee target.

Makefile whitespace fixes.

Make project makefiles correctly clean intermeditary build files from assembly and C++ sources (thanks to Daniel Czigany).

Added new project makefile template to the library and moved board driver stub files into in a new CodeTemplates directory.