Fix Doxygen configuration files' input file exclusion filters.

Fixed DFU bootloader programming not discarding the correct number of filler bytes from the host when non-aligned programming ranges are specified (thanks to Thomas Bleeker).

Fixed lack of support for the ATMEGA32U2 in the DFU and CDC class bootloaders

Changed incomplete Webserver project over to using the uIP timer library.

Increase timeout of Mass Storage and Still Image host commands to 10 seconds (up from 5) to account for slow-processing devices.

Added brace guards to macros with parameters to prevent unintended changed evaluation of the macro expression.

Minor code cleanups (remove redundant comments, fix spacing, etc.).

Add to the existing CDC Class Driver's CreateStream() function documentation to explicitly state that the created streams are bidirectional.

Fix up demo documentation device compatibility list to be as general as possible to reduce changes required as Atmel releases more devices within the same USB AVR series.

Remove USE_NONSTANDARD_DESCRIPTOR_NAMES compile time token, split out standard descriptors into seperate USB_Descriptor_* and USB_StdDescriptor_* structures so that both can be used within the one project.

Add guard to the HID Host Class driver SetProtocol command, to ensure that the device supports boot protocol mode before issuing the request.

Add link to third-party signed version of the official FLIP DFU driver for 64-bit Windows OSes to the DFU bootloader readme file.

Add HTML anchor links to URLs in the documentation to ensure that they are rendered correctly in the generated documentation.

Corrected incorrect signature bytes for the AT90USB82 and added support for the ATMEGAXX2 variant AVRs to the DFU bootloader.

Added warning to the EVENT_USB_Device_Connect() and EVENT_USB_Device_Disconnect() events that they may be fired multiple times during device enumeration on the series 2 AVRs.

Add in new invalid event hook check targets to project makefiles to produce compilation errors when invalid event names are used in a project.

Re-add in flip, flip-ee, dfu and dfu-ee targets to project makefiles (thanks to Opendous Inc.)

Fix allowable F_CPU values comment in project makefiles.

Renamed all library events to properly seperate out Device and Host mode events. Changed the firing conditions for some events to ensure that events are fired by their own USB mode only.

Remove VBUS events - not needed as the library takes care of VBUS detection and feedback on supported AVRs via the USB_Device_Connected and USB_Device_Disconnected events.

Fixed incorrect Host state assignment in the incomplete BluetoothHost demo.

Rename TOTAL_NUM_CONFIGURATIONS to FIXED_NUM_CONFIGURATIONS, to match the existing FIXED_CONTROL_ENDPOINT_SIZE compile time option. Add FIXED_NUM_CONFIGURATIONS to the descriptors of each project using the option.

Change project makefiles so that the current target settings and not just the board selection is printed during the build process.

Fix warning in AudioOutput demos when AUDIO_OUT_STEREO output mode is selected.

Better solution - change compile time token names to DEVICE_STATE_AS_GPIOR and HOST_STATE_AS_GPIOR and allow the user to set them to the index of the GPIOR register within the device to use.

Added HOST_STATE_AS_GPIOR1 and DEVICE_STATE_AS_GPIOR0 compile time options, the latter of which is used in the bootloaders, to reduce code size.

Added new Endpoint_ClearStatusStage() convenience function to assist with the status stages of control transfers.

Removed vague USB_IsConnected global - test USB_DeviceState or USB_HostState explicitly to gain previous functionality.

Removed USB_IsSuspended global - test USB_DeviceState against DEVICE_STATE_Suspended instead.

Fixed possible enumeration errors from spinloops which may fail to exit if the USB connection is severed before the exit condition becomes true.

Change Doxygen configuration files to not produce 4096 directories for the documentation files -- the LUFA components do not generate enough documentation files to justify the large performance hit of creating so many directories.

Fix missing Doxygen documentation in the Class Driver Mass Storage Device demo.

Added new TOTAL_NUM_CONFIGURATIONS option, removed USE_SINGLE_DEVICE_CONFIGURATION compile time option (but silently convert it to USE_SINGLE_DEVICE_CONFIGURATION internally for compatibility).

Added new USE_FLASH_DESCRIPTORS compile time option. By default, descriptors can now lie in mixed memory spaces (specified by a new parameter to the CALLBACK_USB_GetDescriptor() function) unless one of the USE_*_DESCRIPTORS compile time option is specified.

Documented FAST_STREAM_TRANSFERS compile time option.

Reduced the TCP window size for the RNDIS demos (Class and LowLevel) to make them compatible with the AT90USB64x.

Seperated out Lib components of the incomplete BluetoothHost demo application out into a seperate Lib subfolder.

Changed F_CLOCK entries in project makefiles to alias to F_CPU by default, as this is the most common case.

Added parameter directions to function parameter documentation.

Added new experimental FAST_STREAM_FUNCTIONS compile time option to speed up stream transfers at the expense of a higher FLASH consumption (needs testing to verify improved throughput).

Remove all Host mode class demos other than the CDCHost class driver demo, so that they can be re-added as they are made once the host mode class framework is designed.

Fixed USB_Host_SendControlRequest() not re-suspending the USB bus when initial device ready-wait fails.

Fixed USB Pad regulator not being disabled on some AVR models when the USB_OPT_REG_DISABLED option is used.

Add NO_INTERNAL_SERIAL compile time option to bootloaders to prevent them from having unneccesary size increases from unused code.

Re-add signature byte defines to the DFU and CDC class bootloaders -- the SIGNATURE_x defines in the AVR device header files only exist in a newer version of avr-libc than is in the Debian repositories, causing build issues on Linux.

Fix makefiles -- the auto-addition of -D switches to each LUFA compile time option was faulty, due to GNUMake becomming confused by the spaces in the USE_STATIC_OPTIONS lines. Make user add in the switches explicitly instead.

Added new USB_Host_ClearPipeStall() convenience function to clear a stall condition on an attached device's endpoint.

Added new USB_Host_GetDeviceDescriptor() convenience function to retrieve the attached device's Device descriptor.

Make Pipe_ConfigurePipe() mask the given endpoint number against PIPE_EPNUM_MASK to ensure the endpoint IN direction bit is cleared to prevent endpoint type corruption.

Fix documentation mentioning Pipe_GetCurrentToken() function when real name is Pipe_GetPipeToken().

Better documentation for the MissleLauncher project - add credit to PyLauncher project.

Updated bootloaders to use the new main() function layout and remove any references to the scheduler to keep them in line with the rest of the library.